memo_ms.import_data module
- memo_ms.import_data.import_memo_quant_table(path) pandas.core.frame.DataFrame [source]
Import feature quantification table memo ready
- Args:
path (str): Path to feature quantification table
- Returns:
quant_table (DataFrame): A cleaned feature quantification table
- memo_ms.import_data.import_msdial_quant_table(path) pandas.core.frame.DataFrame [source]
Import feature quantification table generated from MS-DIAL and clean it
- Args:
path (str): Path to feature quantification table
- Returns:
quant_table (DataFrame): A cleaned MS-DIAL feature quantification table
- memo_ms.import_data.import_mzmine2_quant_table(path) pandas.core.frame.DataFrame [source]
Import feature quantification table generated from MzMine 2 and clean it
- Args:
path (str): Path to feature quantification table
- Returns:
quant_table (DataFrame): A cleaned MzMine2 feature quantification table
- memo_ms.import_data.import_xcms_quant_table(path) pandas.core.frame.DataFrame [source]
Import feature quantification table generated from XCMS and clean it
- Args:
path (str): Path to feature quantification table
- Returns:
quant_table (DataFrame): A cleaned XCMS feature quantification table
- memo_ms.import_data.load_and_filter_from_mgf(path, min_relative_intensity, max_relative_intensity, loss_mz_from, loss_mz_to, n_required) list [source]
Load and filter spectra from mgf file to prepare for MEMO matrix generation
- Returns:
spectrums (list of matchms.spectrum): a list of matchms.spectrum objects